XINA

DOI: 10.18129/B9.bioc.XINA    

Multiplexes isobaric mass tagged-based kinetics data for network analysis

Bioconductor version: Release (3.8)

An intuitive R package simplifies network analyses output from multiplexed high-dimensional proteomics/trascriptomics kinetics data.

Author: Lee, Lang Ho and Singh, Sasha A.

Maintainer: Lang Ho Lee <langholee at gmail.com> and Sasha A. Singh <sasingh at bwh.harvard.edu>

Citation (from within R, enter citation("XINA")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("XINA", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XINA")

 

HTML R Script xina_user_code
PDF   Reference Manual
Text   NEWS

Details

biocViews Network, Proteomics, RNASeq, Software, SystemsBiology
Version 1.0.0
License GPL-3
Depends R (>= 3.5), Biobase
Imports mclust, plyr, alluvial, ggplot2, igraph, gridExtra, tools, grDevices, graphics, utils, STRINGdb
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XINA_1.0.0.tar.gz
Windows Binary XINA_1.0.0.zip
Mac OS X 10.11 (El Capitan) XINA_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/XINA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XINA
Package Short Url http://bioconductor.org/packages/XINA/
Package Downloads Report Download Stats

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