TxRegInfra

DOI: 10.18129/B9.bioc.TxRegInfra    

Metadata management for multiomic specification of transcriptional regulatory networks

Bioconductor version: Release (3.7)

This package provides interfaces to genomic metadata employed in regulatory network creation, with a focus on noSQL solutions. Currently quantitative representations of eQTLs, DnaseI hypersensitivity sites and digital genomic footprints are assembled using an out-of-memory extension of the RaggedExperiment API.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("TxRegInfra")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("TxRegInfra")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TxRegInfra")

 

HTML R Script TxRegInfra -- classes and methods for TxRegQuery
PDF   Reference Manual
Text   NEWS

Details

biocViews Network, Software
Version 1.0.1
License Artistic-2.0
Depends RaggedExperiment(>= 1.3.11), mongolite
Imports methods, rjson, GenomicRanges, IRanges, BiocParallel, GenomeInfoDb, S4Vectors, SummarizedExperiment, utils
LinkingTo
Suggests knitr, GenomicFiles, EnsDb.Hsapiens.v75, testthat, biovizBase(>= 1.27.2), Gviz, AnnotationFilter, ensembldb
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TxRegInfra_1.0.1.tar.gz
Windows Binary TxRegInfra_1.0.1.zip
Mac OS X 10.11 (El Capitan) TxRegInfra_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/TxRegInfra
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TxRegInfra
Package Short Url http://bioconductor.org/packages/TxRegInfra/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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