Trendy

DOI: 10.18129/B9.bioc.Trendy    

Breakpoint analysis of time-course expression data

Bioconductor version: Release (3.8)

Trendy implements segmented (or breakpoint) regression models to estimate breakpoints which represent changes in expression for each feature/gene in high throughput data with ordered conditions.

Author: Rhonda Bacher and Ning Leng

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("Trendy")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Trendy", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Trendy")

 

PDF R Script Trendy Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews RNASeq, Regression, Software, TimeCourse
Version 1.4.1
License GPL-3
Depends R (>= 3.4)
Imports stats, utils, graphics, grDevices, segmented, gplots, parallel, magrittr, BiocParallel, DT, S4Vectors, SummarizedExperiment, methods, shiny, shinyFiles
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, devtools
SystemRequirements
Enhances
URL https://github.com/rhondabacher/Trendy
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Trendy_1.4.1.tar.gz
Windows Binary Trendy_1.4.1.zip
Mac OS X 10.11 (El Capitan) Trendy_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Trendy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Trendy
Package Short Url http://bioconductor.org/packages/Trendy/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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