TSSi

DOI: 10.18129/B9.bioc.TSSi    

Transcription Start Site Identification

Bioconductor version: Release (3.8)

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Julian Gehring, Clemens Kreutz

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("TSSi")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TSSi", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSSi")

 

PDF R Script Introduction to the TSSi package: Identification of Transcription Start Sites
PDF   Reference Manual

Details

biocViews Genetics, Preprocessing, RNASeq, Sequencing, Software
Version 1.28.0
In Bioconductor since BioC 2.9 (R-2.14) (7 years)
License GPL-3
Depends R (>= 2.13.2)
Imports methods, BiocGenerics(>= 0.3.2), S4Vectors, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges
LinkingTo
Suggests rtracklayer
SystemRequirements
Enhances parallel
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TSSi_1.28.0.tar.gz
Windows Binary TSSi_1.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) TSSi_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TSSi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TSSi
Package Short Url http://bioconductor.org/packages/TSSi/
Package Downloads Report Download Stats

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