SANTA

DOI: 10.18129/B9.bioc.SANTA    

Spatial Analysis of Network Associations

Bioconductor version: Release (3.8)

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex J. Cornish and Florian Markowetz

Maintainer: Alex J. Cornish <a.cornish12 at imperial.ac.uk>

Citation (from within R, enter citation("SANTA")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("SANTA", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")

 

HTML R Script Introduction to SANTA
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Network, NetworkEnrichment, Software
Version 2.20.0
In Bioconductor since BioC 2.12 (R-3.0) (5.5 years)
License GPL (>= 2)
Depends R (>= 2.14), igraph
Imports Matrix, snow
LinkingTo
Suggests RUnit, BiocGenerics, knitr, knitcitations, formatR, org.Sc.sgd.db, BioNet, DLBCL, msm
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SANTA_2.20.0.tar.gz
Windows Binary SANTA_2.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) SANTA_2.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SANTA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SANTA
Package Short Url http://bioconductor.org/packages/SANTA/
Package Downloads Report Download Stats

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