Rhtslib

DOI: 10.18129/B9.bioc.Rhtslib    

HTSlib high-throughput sequencing library as an R package

Bioconductor version: Release (3.7)

This package provides version 1.7 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").

Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Rhtslib")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("Rhtslib")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rhtslib")

 

HTML R Script Motivation and use of Rhtslib
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Sequencing, Software
Version 1.12.1
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License LGPL (>= 2)
Depends
Imports zlibbioc
LinkingTo zlibbioc
Suggests BiocStyle, knitr
SystemRequirements
Enhances
URL https://github.com/nhayden/Rhtslib http://www.htslib.org/
BugReports https://github.com/nhayden/Rhtslib
Depends On Me deepSNV
Imports Me csaw, deepSNV, diffHic, scPipe
Suggests Me
Links To Me bamsignals, csaw, deepSNV, diffHic, methylKit, scPipe
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rhtslib_1.12.1.tar.gz
Windows Binary Rhtslib_1.12.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Rhtslib_1.12.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rhtslib
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rhtslib
Package Short Url http://bioconductor.org/packages/Rhtslib/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: