ROTS

DOI: 10.18129/B9.bioc.ROTS    

Reproducibility-Optimized Test Statistic

Bioconductor version: Release (3.8)

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Fatemeh Seyednasrollah <fatsey at utu.fi>

Citation (from within R, enter citation("ROTS")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ROTS", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")

 

PDF R Script ROTS: Reproducibility Optimized Test Statistic
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Proteomics, RNASeq, Software
Version 1.10.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.3)
Imports Rcpp, stats, Biobase, methods
LinkingTo Rcpp
Suggests testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me PECA, PowerExplorer
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ROTS_1.10.0.tar.gz
Windows Binary ROTS_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) ROTS_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ROTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ROTS
Package Short Url http://bioconductor.org/packages/ROTS/
Package Downloads Report Download Stats

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