ProteomicsAnnotationHubData

DOI: 10.18129/B9.bioc.ProteomicsAnnotationHubData    

Transform public proteomics data resources into Bioconductor Data Structures

Bioconductor version: Release (3.8)

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Author: Gatto Laurent [aut, cre], Sonali Arora [aut]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("ProteomicsAnnotationHubData")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ProteomicsAnnotationHubData", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ProteomicsAnnotationHubData")

 

HTML R Script Proteomics Data in Annotation Hub
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Proteomics, Software
Version 1.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License Artistic-2.0
Depends AnnotationHub(>= 2.1.45), AnnotationHubData
Imports mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocManager, RCurl
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/lgatto/ProteomicsAnnotationHubData
BugReports https://github.com/lgatto/ProteomicsAnnotationHubData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ProteomicsAnnotationHubData_1.12.0.tar.gz
Windows Binary ProteomicsAnnotationHubData_1.12.0.zip
Mac OS X 10.11 (El Capitan) ProteomicsAnnotationHubData_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData
Package Short Url http://bioconductor.org/packages/ProteomicsAnnotationHubData/
Package Downloads Report Download Stats

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