PROPS

DOI: 10.18129/B9.bioc.PROPS    

PRObabilistic Pathway Score (PROPS)

Bioconductor version: Release (3.8)

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Author: Lichy Han

Maintainer: Lichy Han <lhan2 at stanford.edu>

Citation (from within R, enter citation("PROPS")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PROPS", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPS")

 

HTML R Script PRObabilistic Pathway Scores (PROPS)
PDF   Reference Manual

Details

biocViews Bayesian, Classification, GeneExpression, Software
Version 1.4.0
License GPL-2
Depends
Imports bnlearn, reshape2, sva, stats, utils, Biobase
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PROPS_1.4.0.tar.gz
Windows Binary PROPS_1.4.0.zip
Mac OS X 10.11 (El Capitan) PROPS_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PROPS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PROPS
Package Short Url http://bioconductor.org/packages/PROPS/
Package Downloads Report Download Stats

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