Organism.dplyr

DOI: 10.18129/B9.bioc.Organism.dplyr    

dplyr-based Access to Bioconductor Annotation Resources

Bioconductor version: Release (3.8)

This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

Author: Martin Morgan [aut, cre], Yubo Cheng [ctb]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("Organism.dplyr")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Organism.dplyr", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Organism.dplyr")

 

HTML R Script Organism.dplyr
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GenomeAnnotation, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License Artistic-2.0
Depends R (>= 3.4), dplyr (>= 0.7.0), AnnotationFilter(>= 1.1.3)
Imports RSQLite, S4Vectors, GenomeInfoDb, IRanges, GenomicRanges, GenomicFeatures, AnnotationDbi, methods, tools, utils, BiocFileCache, DBI, dbplyr
LinkingTo
Suggests org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, BiocStyle, ggplot2
SystemRequirements
Enhances
URL
Depends On Me annotation
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Organism.dplyr_1.10.0.tar.gz
Windows Binary Organism.dplyr_1.10.0.zip
Mac OS X 10.11 (El Capitan) Organism.dplyr_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Organism.dplyr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Organism.dplyr
Package Short Url http://bioconductor.org/packages/Organism.dplyr/
Package Downloads Report Download Stats

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