OPWeight

DOI: 10.18129/B9.bioc.OPWeight    

Optimal p-value weighting with independent information

Bioconductor version: Release (3.8)

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Citation (from within R, enter citation("OPWeight")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("OPWeight", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OPWeight")

 

HTML R Script Introduction to OPWeight
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, MultipleComparison, RNASeq, Regression, SNP, Software
Version 1.4.0
License Artistic-2.0
Depends R (>= 3.4.0)
Imports graphics, qvalue, MASS, tibble, stats
LinkingTo
Suggests airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat
SystemRequirements
Enhances
URL https://github.com/mshasan/OPWeight
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OPWeight_1.4.0.tar.gz
Windows Binary OPWeight_1.4.0.zip
Mac OS X 10.11 (El Capitan) OPWeight_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OPWeight
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OPWeight
Package Short Url http://bioconductor.org/packages/OPWeight/
Package Downloads Report Download Stats

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