LMGene

DOI: 10.18129/B9.bioc.LMGene    

LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays

Bioconductor version: Release (3.8)

LMGene package for analysis of microarray data using a linear model and glog data transformation

Author: David Rocke, Geun Cheol Lee, John Tillinghast, Blythe Durbin-Johnson, and Shiquan Wu

Maintainer: Blythe Durbin-Johnson <bpdurbin at ucdavis.edu>

Citation (from within R, enter citation("LMGene")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("LMGene", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LMGene")

 

PDF R Script LMGene User's Guide
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, Preprocessing, Software
Version 2.38.0
In Bioconductor since BioC 1.8 (R-2.3) (12.5 years)
License LGPL
Depends R (>= 2.10.0), Biobase(>= 2.5.5), multtest, survival, affy
Imports
LinkingTo
Suggests affydata
SystemRequirements
Enhances
URL http://dmrocke.ucdavis.edu/software.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LMGene_2.38.0.tar.gz
Windows Binary LMGene_2.38.0.zip
Mac OS X 10.11 (El Capitan) LMGene_2.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LMGene
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LMGene
Package Short Url http://bioconductor.org/packages/LMGene/
Package Downloads Report Download Stats

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