Imetagene

DOI: 10.18129/B9.bioc.Imetagene    

A graphical interface for the metagene package

Bioconductor version: Release (3.8)

This package provide a graphical user interface to the metagene package. This will allow people with minimal R experience to easily complete metagene analysis.

Author: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>

Citation (from within R, enter citation("Imetagene")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Imetagene", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Imetagene")

 

HTML R Script Presentation of Imetagene
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Alignment, ChIPSeq, Coverage, Genetics, MultipleComparison, Sequencing, Software
Version 1.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License Artistic-2.0 | file LICENSE
Depends R (>= 3.2.0), metagene, shiny
Imports d3heatmap, shinyBS, shinyFiles, shinythemes, ggplot2
LinkingTo
Suggests knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/andronekomimi/Imetagene/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Imetagene_1.12.0.tar.gz
Windows Binary Imetagene_1.12.0.zip
Mac OS X 10.11 (El Capitan) Imetagene_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Imetagene
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Imetagene
Package Short Url http://bioconductor.org/packages/Imetagene/
Package Downloads Report Download Stats

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