INDEED

DOI: 10.18129/B9.bioc.INDEED    

An Implementation of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection

Bioconductor version: Release (3.8)

An Implementation of Integrated Differential Expression and Differential Network Analysis of Omic Data. The differential network is obtained based on partial correlation or correlation.

Author: Zhenzhi Li <zzrickli at gmail.com>

Maintainer: Zhenzhi Li <zzrickli at gmail.com>, Yiming Zuo <yimingzuo at gmail.com>

Citation (from within R, enter citation("INDEED")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("INDEED", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("INDEED")

 

HTML R Script INDEED R package for cancer biomarker candidate selection
PDF   Reference Manual

Details

biocViews BiologicalQuestion, DifferentialExpression, MassSpectrometry, Metabolomics, ResearchField, Software, StatisticalMethod
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.5), glasso (>= 1.8)
Imports utils (>= 3.3.1), stats (>= 3.3.1), graphics (>= 3.3.1), devtools (>= 1.13.0)
LinkingTo
Suggests knitr (>= 1.19), rmarkdown (>= 1.8), testthat (>= 2.0.0)
SystemRequirements
Enhances
URL http://github.com/ressomlab/INDEED
BugReports http://github.com/ressomlab/INDEED/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package INDEED_1.0.0.tar.gz
Windows Binary INDEED_1.0.0.zip
Mac OS X 10.11 (El Capitan) INDEED_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/INDEED
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/INDEED
Package Short Url http://bioconductor.org/packages/INDEED/
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