FoldGO

DOI: 10.18129/B9.bioc.FoldGO    

Package for Fold-specific GO Terms Recognition

Bioconductor version: Release (3.8)

FoldGO is a package designed to annotate gene sets derived from expression experiments and identify fold-change-specific GO terms.

Author: Daniil Wiebe <daniil.wiebe at gmail.com> [aut, cre]

Maintainer: Daniil Wiebe <daniil.wiebe at gmail.com>

Citation (from within R, enter citation("FoldGO")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("FoldGO", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FoldGO")

 

HTML R Script FoldGO: a tool for fold-change-specific functional enrichment analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GO, GeneExpression, Software
Version 1.0.1
License GPL-3
Depends R (>= 3.5)
Imports topGO(>= 2.30.1), ggplot2 (>= 2.2.1), tidyr (>= 0.8.0), stats, methods
LinkingTo
Suggests knitr, rmarkdown, devtools, kableExtra
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FoldGO_1.0.1.tar.gz
Windows Binary FoldGO_1.0.1.zip
Mac OS X 10.11 (El Capitan) FoldGO_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/FoldGO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FoldGO
Package Short Url http://bioconductor.org/packages/FoldGO/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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