DominoEffect

DOI: 10.18129/B9.bioc.DominoEffect    

Identification and Annotation of Protein Hotspot Residues

Bioconductor version: Release (3.7)

The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.

Author: Marija Buljan and Peter Blattmann

Maintainer: Marija Buljan <marija.buljan.2 at gmail.com>, Peter Blattmann <blattmann at imsb.biol.ethz.ch>

Citation (from within R, enter citation("DominoEffect")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DominoEffect")

Documentation

HTML R Script Vignette for DominoEffect package
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Proteomics, SequenceMatching, Software, SomaticMutation
Version 1.0.0
License GPL (>= 3)
Depends R (>= 3.5)
Imports biomaRt, data.table, utils, stats, Biostrings, SummarizedExperiment, VariantAnnotation, AnnotationDbi, GenomeInfoDb, IRanges, GenomicRanges
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DominoEffect_1.0.0.tar.gz
Windows Binary DominoEffect_1.0.0.zip
Mac OS X 10.11 (El Capitan) DominoEffect_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DominoEffect
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DominoEffect
Package Short Url http://bioconductor.org/packages/DominoEffect/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: