To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DiffLogo")

In most cases, you don't need to download the package archive at all.

DiffLogo

DOI: 10.18129/B9.bioc.DiffLogo    

DiffLogo: A comparative visualisation of biooligomer motifs

Bioconductor version: Release (3.6)

DiffLogo is an easy-to-use tool to visualize motif differences.

Author: c( person("Martin", "Nettling", role = c("aut", "cre"), email = "martin.nettling@informatik.uni-halle.de"), person("Hendrik", "Treutler", role = c("aut", "cre"), email = "hendrik.treutler@ipb-halle.de"), person("Jan", "Grau", role = c("aut", "ctb"), email = "grau@informatik.uni-halle.de"), person("Andrey", "Lando", role = c("aut", "ctb"), email = "dronte@autosome.ru"), person("Jens", "Keilwagen", role = c("aut", "ctb"), email = "jens.keilwagen@julius-kuehn.de"), person("Stefan", "Posch", role = "aut", email = "posch@informatik.uni-halle.de"), person("Ivo", "Grosse", role = "aut", email = "grosse@informatik.uni-halle.de"))

Maintainer: Hendrik Treutler<hendrik.treutler at gmail.com>

Citation (from within R, enter citation("DiffLogo")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DiffLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DiffLogo")

 

PDF R Script Basics of the DiffLogo package
PDF   Reference Manual

Details

biocViews Alignment, MotifAnnotation, MultipleComparison, SequenceMatching, Software, Visualization
Version 2.2.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL (>= 2)
Depends R (>= 3.4), stats, cba
Imports grDevices, graphics, utils, tools
LinkingTo
Suggests knitr, testthat, seqLogo, MotifDb
SystemRequirements
Enhances
URL https://github.com/mgledi/DiffLogo/
BugReports https://github.com/mgledi/DiffLogo/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DiffLogo_2.2.0.tar.gz
Windows Binary DiffLogo_2.2.0.zip
Mac OS X 10.11 (El Capitan) DiffLogo_2.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DiffLogo
Package Short Url http://bioconductor.org/packages/DiffLogo/
Package Downloads Report Download Stats

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