CHARGE

DOI: 10.18129/B9.bioc.CHARGE    

CHARGE: CHromosome Assessment in R from Gene Expression data

Bioconductor version: Release (3.7)

Identifies genomic duplications or deletions from gene expression data.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at sahmri.com>

Citation (from within R, enter citation("CHARGE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CHARGE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHARGE")

 

PDF R Script CHARGE_Example
PDF   Reference Manual

Details

biocViews Clustering, GeneExpression, Software
Version 1.0.0
License GPL-2
Depends R (>= 3.5), GenomicRanges, methods
Imports SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats
LinkingTo
Suggests roxygen2, EnsDb.Hsapiens.v86
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CHARGE_1.0.0.tar.gz
Windows Binary CHARGE_1.0.0.zip
Mac OS X 10.11 (El Capitan) CHARGE_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CHARGE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CHARGE
Package Short Url http://bioconductor.org/packages/CHARGE/
Package Downloads Report Download Stats

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