CGHbase

DOI: 10.18129/B9.bioc.CGHbase    

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: Release (3.8)

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHbase")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("CGHbase", version = "3.8")

Documentation

PDF   Reference Manual

Details

biocViews CopyNumberVariation, Infrastructure, Microarray, Software
Version 1.42.0
In Bioconductor since BioC 2.3 (R-2.8) (10 years)
License GPL
Depends R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/tgac-vumc/CGHbase
BugReports https://github.com/tgac-vumc/CGHbase/issues
Depends On Me CGHcall, CGHnormaliter, CGHregions, GeneBreak, sigaR
Imports Me CGHnormaliter, plrs, QDNAseq
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CGHbase_1.42.0.tar.gz
Windows Binary CGHbase_1.42.0.zip
Mac OS X 10.11 (El Capitan) CGHbase_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGHbase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CGHbase
Package Short Url http://bioconductor.org/packages/CGHbase/
Package Downloads Report Download Stats

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