CAMERA

DOI: 10.18129/B9.bioc.CAMERA    

Collection of annotation related methods for mass spectrometry data

Bioconductor version: Release (3.7)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("CAMERA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CAMERA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")

 

PDF Isotope pattern validation with CAMERA
PDF Isotope pattern validation with CAMERA
PDF R Script Molecule Identification with CAMERA
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Metabolomics, Software
Version 1.36.0
In Bioconductor since BioC 2.4 (R-2.9) (9.5 years)
License GPL (>= 2)
Depends R (>= 2.1.0), methods, Biobase, xcms(>= 1.13.5)
Imports methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph
LinkingTo
Suggests faahKO, RUnit, BiocGenerics
SystemRequirements
Enhances Rmpi, snow
URL http://msbi.ipb-halle.de/msbi/CAMERA/
BugReports https://github.com/sneumann/CAMERA/issues/new
Depends On Me flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids
Imports Me
Suggests Me msPurity, mtbls2, RMassBank, ropls
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAMERA_1.36.0.tar.gz
Windows Binary CAMERA_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CAMERA_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CAMERA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CAMERA
Package Short Url http://bioconductor.org/packages/CAMERA/
Package Downloads Report Download Stats

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