To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("BubbleTree")

In most cases, you don't need to download the package archive at all.

BubbleTree

DOI: 10.18129/B9.bioc.BubbleTree    

BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

Bioconductor version: Release (3.5)

CNV analysis in groups of tumor samples.

Author: Wei Zhu <zhuw at medimmune.com>, Michael Kuziora <kuzioram at medimmune.com>, Todd Creasy <creasyt at medimmune.com>, Brandon Higgs <higgsb at medimmune.com>

Maintainer: Todd Creasy <creasyt at medimmune.com>, Wei Zhu <weizhu365 at gmail.com>, Kui Shen <shenk at medimmune.com>

Citation (from within R, enter citation("BubbleTree")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("BubbleTree")

Documentation

HTML R Script BubbleTree Tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, Coverage, Sequencing, Software
Version 2.6.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License LGPL (>= 3)
Depends R (>= 3.3), IRanges, GenomicRanges, plyr, dplyr, magrittr
Imports BiocGenerics(>= 0.7.5), BiocStyle, Biobase, ggplot2, WriteXLS, gtools, RColorBrewer, limma, grid, gtable, gridExtra, biovizBase, e1071, methods, grDevices, stats, utils
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BubbleTree_2.6.0.tar.gz
Windows Binary BubbleTree_2.6.0.zip
Mac OS X 10.11 (El Capitan) BubbleTree_2.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BubbleTree
Package Short Url http://bioconductor.org/packages/BubbleTree/
Package Downloads Report Download Stats

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