To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("BBCAnalyzer")

In most cases, you don't need to download the package archive at all.

BBCAnalyzer

DOI: 10.18129/B9.bioc.BBCAnalyzer    

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

Bioconductor version: Release (3.5)

BBCAnalyzer is a package for visualizing the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.

Author: Sarah Sandmann

Maintainer: Sarah Sandmann <sarah.sandmann at uni-muenster.de>

Citation (from within R, enter citation("BBCAnalyzer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("BBCAnalyzer")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BBCAnalyzer")

 

PDF R Script Using BBCAnalyzer
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Coverage, GeneticVariability, SNP, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License LGPL-3
Depends
Imports SummarizedExperiment, VariantAnnotation, Rsamtools, grDevices, GenomicRanges, IRanges, Biostrings
LinkingTo
Suggests BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BBCAnalyzer_1.6.0.tar.gz
Windows Binary BBCAnalyzer_1.6.0.zip
Mac OS X 10.11 (El Capitan) BBCAnalyzer_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BBCAnalyzer
Package Short Url http://bioconductor.org/packages/BBCAnalyzer/
Package Downloads Report Download Stats

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