To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AnnotationHubData")

In most cases, you don't need to download the package archive at all.

AnnotationHubData

 

   

Transform public data resources into Bioconductor Data Structures

Bioconductor version: Release (3.5)

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHubData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AnnotationHubData")

Documentation

HTML R Script Introduction to AnnotationHubData
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Software
Version 1.6.0
In Bioconductor since BioC 3.2 (R-3.2) (1.5 years)
License Artistic-2.0
Depends R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub(>= 2.7.10)
Imports GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocInstaller, biocViews, AnnotationDbi, Biobase, Biostrings, DBI, GEOquery, GenomeInfoDb, OrganismDbi, RSQLite, rBiopaxParser, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
LinkingTo
Suggests RUnit, knitr, BiocStyle, grasp2db, BiocInstaller
SystemRequirements
Enhances
URL
Depends On Me ExperimentHubData, ProteomicsAnnotationHubData
Imports Me AHEnsDbs
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AnnotationHubData_1.6.0.tar.gz
Windows Binary AnnotationHubData_1.6.0.zip
Mac OS X 10.11 (El Capitan) AnnotationHubData_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AnnotationHubData/tree/release-3.5
Package Short Url http://bioconductor.org/packages/AnnotationHubData/
Package Downloads Report Download Stats

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