AnnotationForge

DOI: 10.18129/B9.bioc.AnnotationForge    

Code for Building Annotation Database Packages

Bioconductor version: Release (3.7)

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Hervé Pagès

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationForge")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AnnotationForge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationForge")

 

PDF R Script AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF R Script Creating probe packages
HTML R Script Making New Organism Packages
PDF R Script SQLForge: An easy way to create a new annotation package with a standard database schema.
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.22.2
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), AnnotationDbi(>= 1.33.14)
Imports DBI, RSQLite, XML, S4Vectors, RCurl
LinkingTo
Suggests biomaRt, httr, GenomeInfoDb(>= 1.16.0), Biostrings, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats
Suggests Me AnnotationDbi, AnnotationHub
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnnotationForge_1.22.2.tar.gz
Windows Binary AnnotationForge_1.22.1.zip
Mac OS X 10.11 (El Capitan) AnnotationForge_1.22.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnnotationForge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnnotationForge
Package Short Url http://bioconductor.org/packages/AnnotationForge/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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