To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AffyRNADegradation")

In most cases, you don't need to download the package archive at all.

AffyRNADegradation

DOI: 10.18129/B9.bioc.AffyRNADegradation    

Analyze and correct probe positional bias in microarray data due to RNA degradation

Bioconductor version: Release (3.5)

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Author: Mario Fasold

Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>

Citation (from within R, enter citation("AffyRNADegradation")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AffyRNADegradation")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyRNADegradation")

 

PDF R Script AffyRNADegradation Example
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software
Version 1.22.0
In Bioconductor since BioC 2.10 (R-2.15) (5.5 years)
License GPL-2
Depends R (>= 2.9.0), methods, affy
Imports
LinkingTo
Suggests AmpAffyExample
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AffyRNADegradation_1.22.0.tar.gz
Windows Binary AffyRNADegradation_1.22.0.zip
Mac OS X 10.11 (El Capitan) AffyRNADegradation_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AffyRNADegradation
Package Short Url http://bioconductor.org/packages/AffyRNADegradation/
Package Downloads Report Download Stats

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