To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AIMS")

In most cases, you don't need to download the package archive at all.

AIMS

 

   

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Bioconductor version: Release (3.5)

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Author: Eric R. Paquet, Michael T. Hallett

Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>

Citation (from within R, enter citation("AIMS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AIMS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AIMS")

 

PDF R Script AIMS An Introduction (HowTo)
PDF   Reference Manual
Text   README

Details

biocViews Classification, GeneExpression, Microarray, RNASeq, Software
Version 1.8.0
In Bioconductor since BioC 3.1 (R-3.2) (2 years)
License Artistic-2.0
Depends R (>= 2.10), e1071, Biobase
Imports
LinkingTo
Suggests breastCancerVDX, hgu133a.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL http://www.bci.mcgill.ca/AIMS
Depends On Me genefu
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AIMS_1.8.0.tar.gz
Windows Binary AIMS_1.8.0.zip
Mac OS X 10.11 (El Capitan) AIMS_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AIMS/tree/release-3.5
Package Short Url http://bioconductor.org/packages/AIMS/
Package Downloads Report Download Stats

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