tissueTreg

DOI: 10.18129/B9.bioc.tissueTreg    

This is the development version of tissueTreg; for the stable release version, see tissueTreg.

TWGBS and RNA-seq data from tissue T regulatory cells from mice

Bioconductor version: Development (3.8)

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]

Maintainer: Charles Imbusch <c.imbusch at dkfz.de>

Citation (from within R, enter citation("tissueTreg")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("tissueTreg", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tissueTreg")

 

HTML R Script tissueTreg
PDF   Reference Manual
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Details

biocViews ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue
Version 1.1.0
License GPL (>= 2)
Depends R (>= 3.5)
Imports
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment
SystemRequirements
Enhances
URL https://github.com/cimbusch/tissueTreg
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tissueTreg_1.1.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/tissueTreg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tissueTreg
Package Short Url http://bioconductor.org/packages/tissueTreg/
Package Downloads Report Download Stats

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