tcgaWGBSData.hg19

DOI: 10.18129/B9.bioc.tcgaWGBSData.hg19    

This is the development version of tcgaWGBSData.hg19; to use it, please install the devel version of Bioconductor.

Data

Bioconductor version: Development (3.8)

Data package for WGBS Data in TCGA. Data is stored as SummarizedExperiment Format. See vignette on how to extract the data and perform differential methylation analysis.

Author: Divy Kangeyan <divyswar01 at g.harvard.edu>

Maintainer: Divy Kangeyan <divyswar01 at g.harvard.edu>

Citation (from within R, enter citation("tcgaWGBSData.hg19")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("tcgaWGBSData.hg19", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tcgaWGBSData.hg19")

 

HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews CancerData, ExperimentData, Genome, Homo_sapiens_Data, SequencingData
Version 0.99.3
License GPL-2
Depends R (>= 3.5.0), ExperimentHub
Imports bsseq, knitr
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tcgaWGBSData.hg19_0.99.3.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/tcgaWGBSData.hg19
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tcgaWGBSData.hg19
Package Short Url http://bioconductor.org/packages/tcgaWGBSData.hg19/
Package Downloads Report Download Stats

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