pcxnData

DOI: 10.18129/B9.bioc.pcxnData    

This is the development version of pcxnData; for the stable release version, see pcxnData.

Correlation coefficients and p values between pre-defined pathway/gene sets

Bioconductor version: Development (3.8)

PCxN database contains correlation coefficients and p values between pre-defined gene sets within MSigDB H hallmark gene sets, MSigDB C2 CP (Canonical pathways), MSigDB C5 GO BP gene sets and Pathprint respectively, as well as adjusted pathway correlations to account for the shared genes between pathway pairs.

Author: Sokratis Kariotis, Yered Pita-Juarez, Wenbin Wei, Winston Hide

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pcxnData")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("pcxnData", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pcxnData")

 

PDF R Script pcxnData
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, OneChannelData, PathwayInteractionDatabase
Version 2.3.0
License MIT + file LICENSE
Depends R (>= 3.4)
Imports
LinkingTo
Suggests pcxn
SystemRequirements
Enhances
URL
Depends On Me pcxn
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pcxnData_2.3.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/pcxnData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pcxnData
Package Short Url http://bioconductor.org/packages/pcxnData/
Package Downloads Report Download Stats

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