To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("mtbls2")

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mtbls2

DOI: 10.18129/B9.bioc.mtbls2    

This is the development version of mtbls2; for the stable release version, see mtbls2.

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Bioconductor version: Development (3.7)

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

Author: Steffen Neumann <sneumann at ipb-halle.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("mtbls2")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("mtbls2")

Documentation

HTML R Script MTBLS2 Processing and Analysis with xcms, CAMERA and export to MetaboLights
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, MassSpectrometryData, RepositoryData
Version 1.9.0
License CC0
Depends R (>= 2.10)
Imports
LinkingTo
Suggests xcms(>= 1.43.3), CAMERA, Risa(>= 1.0.0), knitr, Heatplus, pcaMethods, sp
SystemRequirements
Enhances
URL http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2
Depends On Me
Imports Me
Suggests Me IPO, yamss
Build Report  

Package Archives

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Source Package mtbls2_1.9.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/mtbls2
Package Short Url http://bioconductor.org/packages/mtbls2/
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