DOI: 10.18129/B9.bioc.msdata    

This is the development version of msdata; for the stable release version, see msdata.

Various Mass Spectrometry raw data example files

Bioconductor version: Development (3.8)

Ion Trap positive ionization mode data in mzData file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzData, mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at>, Laurent Gatto <lg390 at> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at>, Laurent Gatto <lg390 at>

Citation (from within R, enter citation("msdata")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
BiocManager::install("msdata", version = "devel")


PDF   Reference Manual


biocViews ExperimentData, MassSpectrometryData
Version 0.21.0
License GPL (>= 2)
Depends R (>= 2.10)
Suggests xcms, mzR, MSnbase
Depends On Me
Imports Me
Suggests Me IPO, MSnbase, mzR, RforProteomics, xcms
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msdata_0.21.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: