minfiDataEPIC

DOI: 10.18129/B9.bioc.minfiDataEPIC    

This is the development version of minfiDataEPIC; for the stable release version, see minfiDataEPIC.

Example data for the Illumina Methylation EPIC array

Bioconductor version: Development (3.9)

Data from 3 technical replicates of the cell line GM12878 from the EPIC methylation array.

Author: Jean-Philippe Fortin, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("minfiDataEPIC")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("minfiDataEPIC", version = "3.9")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.9.0
License Artistic-2.0
Depends R (>= 3.3), minfi(>= 1.21.2), IlluminaHumanMethylationEPICmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MethylAid, MethylAidData, minfi, REMP
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package minfiDataEPIC_1.9.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/minfiDataEPIC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minfiDataEPIC
Package Short Url http://bioconductor.org/packages/minfiDataEPIC/
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