DOI: 10.18129/B9.bioc.furrowSeg    

This is the development version of furrowSeg; for the stable release version, see furrowSeg.

Furrow Segmentation

Bioconductor version: Development (3.8)

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("furrowSeg")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("furrowSeg", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Supplementary Methods - Automatic generation of paper figures
PDF R Script Supplementary Methods - Example furrow segmentation
PDF   Reference Manual


biocViews Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue
Version 1.9.0
License Artistic-2.0
Depends R (>= 3.3), EBImage
Imports abind, dplyr, locfit, tiff
Suggests BiocStyle, ggplot2, knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package furrowSeg_1.9.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/furrowSeg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/furrowSeg
Package Short Url http://bioconductor.org/packages/furrowSeg/
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