DOI: 10.18129/B9.bioc.curatedTCGAData    

This is the development version of curatedTCGAData; for the stable release version, see curatedTCGAData.

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Bioconductor version: Development (3.7)

This package provides publicly available data from The Cancer Genome Atlas (TCGA) Bioconductor MultiAssayExperiment class objects. These objects integrate multiple assays (e.g. RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. The MultiAssayExperiment class links assay barcodes with patient IDs, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire experiment.

Author: Marcel Ramos <marcel.ramos at>, Levi Waldron <lwaldron.research at>, Lucas Schiffer <schiffer.lucas at>, Valerie Obenchain <valerie.obenchain at>, Morgan Martin <martin.morgan at>

Maintainer: Marcel Ramos <marcel.ramos at>

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biocViews CancerData, ExperimentData, Homo_sapiens_Data, ReproducibleResearch
Version 1.1.12
License Artistic-2.0
Depends R (>= 3.4.0), MultiAssayExperiment
Imports AnnotationHub, ExperimentHub, S4Vectors, utils
Suggests BiocStyle, knitr, readr, rmarkdown, testthat
Depends On Me
Imports Me
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