To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("curatedBreastData")

In most cases, you don't need to download the package archive at all.

curatedBreastData

DOI: 10.18129/B9.bioc.curatedBreastData    

This is the development version of curatedBreastData; for the stable release version, see curatedBreastData.

Curated breast cancer gene expression data with survival and treatment information

Bioconductor version: Development (3.6)

Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2,000 patients. All datasets contain at least one type of outcomes variable and treatment information (minimum level: whether they had chemotherapy and whether they had hormonal therapy). Includes code to post-process these datasets.

Author: Katie Planey

Maintainer: Katie Planey <katie.planey at gmail.com>

Citation (from within R, enter citation("curatedBreastData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("curatedBreastData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedBreastData")

 

PDF R Script Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews BreastCancerData, CancerData, ExperimentData, ExpressionData, GEO, MicroarrayData, Tissue, TissueMicroarrayData, qPCRData
Version 2.5.0
License GPL (>= 2)
Depends R (>= 3.0.0), XML, ggplot2, impute, Biobase, BiocStyle
Imports methods, stats
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SystemRequirements
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Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedBreastData_2.5.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/curatedBreastData
Package Short Url http://bioconductor.org/packages/curatedBreastData/
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