To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("aracne.networks")

In most cases, you don't need to download the package archive at all.

aracne.networks

DOI: 10.18129/B9.bioc.aracne.networks    

This is the development version of aracne.networks; for the stable release version, see aracne.networks.

ARACNe-inferred gene networks from TCGA tumor datasets

Bioconductor version: Development (3.6)

This package contains ARACNe-inferred networks from TCGA tumor datasets. It also contains a function to export them into plain-text format.

Author: Federico M. Giorgi

Maintainer: Federico M. Giorgi <federico.giorgi at gmail.com>, Mariano Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("aracne.networks")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("aracne.networks")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aracne.networks")

 

PDF R Script Using aracne.networks
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews CancerData, ExperimentData, Genome, Homo_sapiens_Data
Version 1.3.1
License file LICENSE
Depends R (>= 3.3), viper
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aracne.networks_1.3.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/aracne.networks
Package Short Url http://bioconductor.org/packages/aracne.networks/
Package Downloads Report Download Stats

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