To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("VariantToolsData")

In most cases, you don't need to download the package archive at all.

VariantToolsData

 

   

This is the development version of VariantToolsData; for the stable release version, see VariantToolsData.

Data for the VariantTools tutorial

Bioconductor version: Development (3.6)

Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("VariantToolsData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("VariantToolsData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VariantToolsData")

 

PDF R Script VariantTools Example Data
PDF   Reference Manual

Details

biocViews ExperimentData, HapMap, SNPData, SequencingData
Version 1.1.1
License Artistic-2.0
Depends R (>= 2.10), VariantAnnotation(>= 1.7.35)
Imports BiocGenerics, GenomicRanges
LinkingTo
Suggests VariantTools(>= 1.3.4), gmapR(>= 1.3.3), BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source VariantToolsData_1.1.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/VariantToolsData/
Package Downloads Report Download Stats

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