DOI: 10.18129/B9.bioc.RcisTarget.hg19.motifDBs.cisbpOnly.500bp    

This is the development version of RcisTarget.hg19.motifDBs.cisbpOnly.500bp; to use it, please install the devel version of Bioconductor.

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs

Bioconductor version: Development (3.7)

RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. Due to size restrictions, this specific package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. The full database, containing 20k motifs and search space up to 10kbp around the TSS, is available for download at http://scenic.aertslab.org.

Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.

Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>

Citation (from within R, enter citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")):


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biocViews ExperimentData, Homo_sapiens_Data
Version 0.99.6
License GPL-3
Depends R (>= 3.4)
Imports SummarizedExperiment
URL http://scenic.aertslab.org
Depends On Me
Imports Me
Suggests Me RcisTarget
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Source Package RcisTarget.hg19.motifDBs.cisbpOnly.500bp_0.99.6.tar.gz
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Source Repository git clone https://git.bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Package Short Url http://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/
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