DOI: 10.18129/B9.bioc.RNAseqData.HNRNPC.bam.chr14    

This is the development version of RNAseqData.HNRNPC.bam.chr14; for the stable release version, see RNAseqData.HNRNPC.bam.chr14.

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Development (3.8)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
BiocManager::install("RNAseqData.HNRNPC.bam.chr14", version = "devel")


PDF   Reference Manual


biocViews ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version 0.19.0
License LGPL
Suggests GenomicAlignments, BiocInstaller
URL http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me samExploreR, sequencing
Imports Me
Suggests Me BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAseqData.HNRNPC.bam.chr14_0.19.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url http://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: