To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("PasillaTranscriptExpr")

In most cases, you don't need to download the package archive at all.

PasillaTranscriptExpr

DOI: 10.18129/B9.bioc.PasillaTranscriptExpr    

This is the development version of PasillaTranscriptExpr; for the stable release version, see PasillaTranscriptExpr.

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Bioconductor version: Development (3.7)

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("PasillaTranscriptExpr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("PasillaTranscriptExpr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")

 

PDF R Script Generation of transcript counts from pasilla dataset with kallisto
PDF   Reference Manual
Text   NEWS

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData
Version 1.7.0
License GPL (>= 3)
Depends R (>= 3.3.0)
Imports
LinkingTo
Suggests rtracklayer, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me DRIMSeq
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PasillaTranscriptExpr_1.7.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr
Package Short Url http://bioconductor.org/packages/PasillaTranscriptExpr/
Package Downloads Report Download Stats

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