To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("HMP16SData")

In most cases, you don't need to download the package archive at all.

HMP16SData

DOI: 10.18129/B9.bioc.HMP16SData    

This is the development version of HMP16SData; to use it, please install the devel version of Bioconductor.

16S rRNA Microbiome Data from the Human Microbiome Project

Bioconductor version: Development (3.7)

The HMP16SData package is a Bioconductor ExperimentHub package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1-3 and 3-5. The raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center website. Processed data is provided as SummarizedExperiment objects via ExperimentHub.

Author: Lucas Schiffer <schiffer.lucas at gmail.com>, Rimsha Azhar <rimsha_azhar at hotmail.com>, Marcel Ramos <marcel.ramos at roswellpark.org>, Ludwig Geistlinger <ludwig.geistlinger at sph.cuny.edu>, Levi Waldron <lwaldron.research at gmail.com>

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("HMP16SData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("HMP16SData")

Documentation

HTML R Script HMP16SData
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch
Version 0.99.81
License Artistic-2.0
Depends R (>= 3.5.0)
Imports ExperimentHub, SummarizedExperiment, utils
LinkingTo
Suggests Biobase, BiocCheck, BiocInstaller, BiocStyle, dplyr, knitr, magrittr, readr, rmarkdown, testthat, tibble
SystemRequirements
Enhances
URL https://github.com/waldronlab/HMP16SData
BugReports https://github.com/waldronlab/HMP16SData/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HMP16SData_0.99.81.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HMP16SData
Package Short Url http://bioconductor.org/packages/HMP16SData/
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