DOI: 10.18129/B9.bioc.HMP16SData    

This is the development version of HMP16SData; to use it, please install the devel version of Bioconductor.

16S rRNA Microbiome Data from the Human Microbiome Project

Bioconductor version: Development (3.7)

The HMP16SData package is a Bioconductor ExperimentHub package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. The raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center website. Processed data is provided as SummarizedExperiment objects via ExperimentHub.

Author: Lucas Schiffer <schiffer.lucas at>, Rimsha Azhar <rimsha_azhar at>, Marcel Ramos <marcel.ramos at>, Ludwig Geistlinger <ludwig.geistlinger at>, Levi Waldron <lwaldron.research at>

Maintainer: Lucas Schiffer <schiffer.lucas at>

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biocViews ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch, SequencingData
Version 0.99.82
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports assertthat, curatedMetagenomicData, dplyr, ExperimentHub, magrittr, methods, readr, S4Vectors, taxize, tibble, tools, utils, pbapply
Suggests Biobase, BiocCheck, BiocInstaller, BiocStyle, devtools, ggplot2, knitr, phyloseq, rmarkdown, roxygen2, testthat
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