To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CopyhelpeR")

In most cases, you don't need to download the package archive at all.

CopyhelpeR

DOI: 10.18129/B9.bioc.CopyhelpeR    

This is the development version of CopyhelpeR; for the stable release version, see CopyhelpeR.

Helper files for CopywriteR

Bioconductor version: Development (3.7)

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Thomas Kuilman <t.kuilman at nki.nl>

Citation (from within R, enter citation("CopyhelpeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CopyhelpeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")

 

PDF R Script CopyhelpeR
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, GenomicSequence, Homo_sapiens
Version 1.11.0
License GPL-2
Depends R (>= 2.10)
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me CopywriteR
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CopyhelpeR_1.11.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/CopyhelpeR
Package Short Url http://bioconductor.org/packages/CopyhelpeR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: