To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AshkenazimSonChr21")

In most cases, you don't need to download the package archive at all.

AshkenazimSonChr21

DOI: 10.18129/B9.bioc.AshkenazimSonChr21    

This is the development version of AshkenazimSonChr21; for the stable release version, see AshkenazimSonChr21.

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

Bioconductor version: Development (3.7)

SonVariantsChr21 is a dataset of annotated genomic variants coming from Complete Genomics whole genome sequencing. Data comes from GIAB project, Ashkenazim Trio, sample HG002 run 1. Both vcf and annotated data frame are provided.

Author: Tomasz Stokowy

Maintainer: Who to complain to <tomasz.stokowy at k2.uib.no>

Citation (from within R, enter citation("AshkenazimSonChr21")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AshkenazimSonChr21")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AshkenazimSonChr21")

 

PDF R Script RareVariantVis
PDF   Reference Manual

Details

biocViews ExperimentData, GenomicVariation, Sequencing, WholeGenome
Version 1.9.0
License Artistic-2.0
Depends
Imports
LinkingTo
Suggests knitr, VariantAnnotation
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AshkenazimSonChr21_1.9.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/AshkenazimSonChr21
Package Short Url http://bioconductor.org/packages/AshkenazimSonChr21/
Package Downloads Report Download Stats

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