DOI: 10.18129/B9.bioc.tenXplore    

This is the development version of tenXplore; for the stable release version, see tenXplore.

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: Development (3.9)

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("tenXplore")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("tenXplore", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons
PDF   Reference Manual


biocViews DimensionReduction, PrincipalComponent, SingleCell, Software, Transcriptomics
Version 1.5.0
License Artistic-2.0
Depends R (>= 3.4), shiny, restfulSE(>= 0.99.12)
Imports methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils
Suggests org.Hs.eg.db, testthat, knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tenXplore_1.5.0.tar.gz
Windows Binary tenXplore_1.5.0.zip
Mac OS X 10.11 (El Capitan) tenXplore_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tenXplore
Package Short Url http://bioconductor.org/packages/tenXplore/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: