rama

DOI: 10.18129/B9.bioc.rama    

This is the development version of rama; for the stable release version, see rama.

Robust Analysis of MicroArrays

Bioconductor version: Development (3.9)

Robust estimation of cDNA microarray intensities with replicates. The package uses a Bayesian hierarchical model for the robust estimation. Outliers are modeled explicitly using a t-distribution, and the model also addresses classical issues such as design effects, normalization, transformation, and nonconstant variance.

Author: Raphael Gottardo

Maintainer: Raphael Gottardo <raph at stat.ubc.ca>

Citation (from within R, enter citation("rama")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rama", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rama")

 

PDF R Script rama Tutorial
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.57.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License GPL (>= 2)
Depends R (>= 2.5.0)
Imports
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rama_1.57.0.tar.gz
Windows Binary rama_1.57.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) rama_1.57.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rama
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rama
Package Short Url http://bioconductor.org/packages/rama/
Package Downloads Report Download Stats

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