rWikiPathways

DOI: 10.18129/B9.bioc.rWikiPathways    

This is the development version of rWikiPathways; for the stable release version, see rWikiPathways.

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: Development (3.9)

Use this package to interface with the WikiPathways API.

Author: Egon Willighagen [aut, cre] (<https://orcid.org/0000-0001-7542-0286>), Alex Pico [aut] (<https://orcid.org/0000-0001-5706-2163>)

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>, Alexander Pico <alex.pico at gladstone.ucsf.edu>

Citation (from within R, enter citation("rWikiPathways")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rWikiPathways", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")

 

HTML R Script 1. Overview
HTML R Script 2. rWikiPathways and BridgeDbR
HTML R Script 3. rWikiPathways and RCy3
HTML R Script 4. Pathway Analysis
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version 1.3.0
License MIT + file LICENSE
Depends R (>= 3.5)
Imports caTools, httr, RJSONIO, utils
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/wikipathways/rwikipathways
BugReports https://github.com/wikipathways/rwikipathways/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rWikiPathways_1.3.0.tar.gz
Windows Binary rWikiPathways_1.3.0.zip
Mac OS X 10.11 (El Capitan) rWikiPathways_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rWikiPathways
Package Short Url http://bioconductor.org/packages/rWikiPathways/
Package Downloads Report Download Stats

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