qPLEXanalyzer

DOI: 10.18129/B9.bioc.qPLEXanalyzer    

This is the development version of qPLEXanalyzer; for the stable release version, see qPLEXanalyzer.

Tools for qPLEX-RIME data analysis

Bioconductor version: Development (3.9)

Tools for quantitative proteomics data analysis generated from qPLEX-RIME method.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Citation (from within R, enter citation("qPLEXanalyzer")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("qPLEXanalyzer", version = "3.9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")

 

PDF R Script qPLEXanalyzer.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.1.0
License GPL-2
Depends R (>= 3.5), Biobase, statmod, MSnbase
Imports tidyr, preprocessCore, limma, ggplot2, RColorBrewer, stats, utils, Biostrings, GenomicRanges, IRanges, graphics, BiocGenerics, stringr, purrr, tibble, ggdendro, grDevices, dplyr, magrittr, assertthat
LinkingTo
Suggests UniProt.ws, knitr, qPLEXdata
SystemRequirements
Enhances
URL
BugReports https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qPLEXanalyzer_1.1.0.tar.gz
Windows Binary qPLEXanalyzer_0.99.12.zip
Mac OS X 10.11 (El Capitan) qPLEXanalyzer_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Package Short Url http://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report Download Stats

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