pvac

DOI: 10.18129/B9.bioc.pvac    

This is the development version of pvac; for the stable release version, see pvac.

PCA-based gene filtering for Affymetrix arrays

Bioconductor version: Development (3.9)

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

Author: Jun Lu and Pierre R. Bushel

Maintainer: Jun Lu <jlu276 at gmail.com>, Pierre R. Bushel <bushel at niehs.nih.gov>

Citation (from within R, enter citation("pvac")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("pvac", version = "3.9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pvac")

 

PDF R Script PCA-based gene filtering for Affymetrix GeneChips
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Software
Version 1.31.0
In Bioconductor since BioC 2.8 (R-2.13) (7.5 years)
License LGPL (>= 2.0)
Depends R (>= 2.8.0)
Imports affy(>= 1.20.0), stats, Biobase
LinkingTo
Suggests pbapply, affydata, ALLMLL, genefilter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pvac_1.31.0.tar.gz
Windows Binary pvac_1.31.0.zip
Mac OS X 10.11 (El Capitan) pvac_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pvac
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pvac
Package Short Url http://bioconductor.org/packages/pvac/
Package Downloads Report Download Stats

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