DOI: 10.18129/B9.bioc.proBAMr    

This is the development version of proBAMr; for the stable release version, see proBAMr.

Generating SAM file for PSMs in shotgun proteomics data

Bioconductor version: Development (3.9)

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang < at>

Citation (from within R, enter citation("proBAMr")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("proBAMr", version = "3.9")


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Introduction to proBAMr
PDF   Reference Manual
Text   NEWS


biocViews MassSpectrometry, Proteomics, Software, Visualization
Version 1.17.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License Artistic-2.0
Depends R (>= 3.0.1), IRanges, AnnotationDbi
Imports GenomicRanges, Biostrings, GenomicFeatures, rtracklayer
Suggests RUnit, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package proBAMr_1.17.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) proBAMr_1.17.0.tgz
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