intansv

DOI: 10.18129/B9.bioc.intansv    

This is the development version of intansv; for the stable release version, see intansv.

Integrative analysis of structural variations

Bioconductor version: Development (3.9)

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Author: Wen Yao <ywhzau at gmail.com>

Maintainer: Wen Yao <ywhzau at gmail.com>

Citation (from within R, enter citation("intansv")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("intansv", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("intansv")

 

PDF R Script An Introduction to intansv
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Genetics, Sequencing, Software
Version 1.23.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License Artistic-2.0
Depends R (>= 2.14.0), plyr, ggbio, GenomicRanges
Imports BiocGenerics, IRanges
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package intansv_1.23.0.tar.gz
Windows Binary intansv_1.23.0.zip
Mac OS X 10.11 (El Capitan) intansv_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/intansv
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/intansv
Package Short Url http://bioconductor.org/packages/intansv/
Package Downloads Report Download Stats

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